Index

B | D | G | H | I | L | M | N | P | R | S | T | V | W

B

breakpoints() (msprime.TreeSequence method)

D

DemographyDebugger (class in msprime)
diffs() (msprime.TreeSequence method)
draw() (msprime.SparseTree method)
dump() (msprime.TreeSequence method)

G

get_branch_length() (msprime.SparseTree method)
get_children() (msprime.SparseTree method)
get_index() (msprime.SparseTree method)
get_interval() (msprime.SparseTree method)
get_length() (msprime.SparseTree method)
get_mrca() (msprime.SparseTree method)
get_num_leaves() (msprime.SparseTree method)
get_num_mutations() (msprime.SparseTree method)
(msprime.TreeSequence method)
get_num_nodes() (msprime.TreeSequence method)
get_num_records() (msprime.TreeSequence method)
get_num_tracked_leaves() (msprime.SparseTree method)
get_num_trees() (msprime.TreeSequence method)
get_pairwise_diversity() (msprime.TreeSequence method)
get_parent() (msprime.SparseTree method)
get_population() (msprime.SparseTree method)
(msprime.TreeSequence method)
get_r2() (msprime.LdCalculator method)
get_r2_array() (msprime.LdCalculator method)
get_r2_matrix() (msprime.LdCalculator method)
get_root() (msprime.SparseTree method)
get_sample_size() (msprime.SparseTree method)
(msprime.TreeSequence method)
get_samples() (msprime.TreeSequence method)
get_sequence_length() (msprime.TreeSequence method)
get_time() (msprime.SparseTree method)
(msprime.TreeSequence method)
get_tmrca() (msprime.SparseTree method)
get_total_branch_length() (msprime.SparseTree method)

H

haplotypes() (msprime.TreeSequence method)

I

is_internal() (msprime.SparseTree method)
is_leaf() (msprime.SparseTree method)

L

LdCalculator (class in msprime)
leaves() (msprime.SparseTree method)
load() (in module msprime)
load_txt() (in module msprime)

M

MassMigration (class in msprime)
MigrationRateChange (class in msprime)
mutations() (msprime.SparseTree method)
(msprime.TreeSequence method)

N

nodes() (msprime.SparseTree method)

P

PopulationConfiguration (class in msprime)
PopulationParametersChange (class in msprime)
print_history() (msprime.DemographyDebugger method)

R

read_hapmap() (msprime.RecombinationMap class method)
RecombinationMap (class in msprime)
records() (msprime.TreeSequence method)

S

set_mutations() (msprime.TreeSequence method)
simulate() (in module msprime)
SparseTree (class in msprime)

T

trees() (msprime.TreeSequence method)
TreeSequence (class in msprime)

V

variants() (msprime.TreeSequence method)

W

write_mutations() (msprime.TreeSequence method)
write_records() (msprime.TreeSequence method)
write_vcf() (msprime.TreeSequence method)